CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608691_at

Gene name hypothetical protein LOC100248623
Homology with Arabidopsis Similar to At1g78630: emb1473 (embryo defective 1473) (HF=6e-27)

Module size 6 genes

NF 0.82

%ile 98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.99 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.91 98.8 0.99 1616390_at CF211469 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative O.I. H.G. S.X.
0.83 94.6 0.99 1621569_at CD801894 hypothetical protein LOC100257626 - 4e-7 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.77 92.3 0.99 1614138_at CA815957 hypothetical protein LOC100254839 - 3e-14 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative O.I. H.G. S.X.
0.67 87.9 0.99 1620854_at CA818411 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein O.I. H.G. S.X.
0.50 72.7 0.99 1622193_at CF208331 hypothetical protein LOC100265325 - 2e-35 At5g30510 RPS1 (RIBOSOMAL PROTEIN S1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.8 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.8 97.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6 97.6 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1 94.6 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
2.9 93.8 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.7 93.0 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig6936_at, orthologous to the query gene, 1608691_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 66.9 Contig6936_at At1g78630 - - 2e+0 At4g22950 AGL19 (AGAMOUS-LIKE 19) O.I. H.G. S.X.
0.61 78.7 Contig6585_at At1g78630 - - 1e-8 At5g58620 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.60 77.3 Contig3870_at At1g78630 - - 4e-44 At5g20570 RBX1 (RING-BOX 1) O.I. H.G. S.X.
0.50 66.9 Contig10884_at At1g78630 - - 3e-3 At5g17510 unknown protein O.I. H.G. S.X.
0.36 47.1 Contig13485_s_at At1g78630 - - 4e+0 At5g35631 unknown protein O.I. H.G. S.X.
0.19 19.6 Contig5616_at At1g78630 - - 4e-17 At4g33250 EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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