Co-expression analysis

Gene ID 1608691_at
Gene name hypothetical protein LOC100248623
Homology with ArabidopsisSimilar to At1g78630: emb1473 (embryo defective 1473) (HF=6e-27)
Module size 6 genes
NF 0.82
%ile 98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.991608691_atCB345817hypothetical protein LOC100248623-6e-27At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.9198.80.991616390_atCF211469hypothetical protein LOC100248042-1e-41At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.8394.60.991621569_atCD801894hypothetical protein LOC100257626-4e-7At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.7792.30.991614138_atCA815957hypothetical protein LOC100254839-3e-14At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.6787.90.991620854_atCA818411hypothetical protein LOC100258321-7e-12At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.
0.5072.70.991622193_atCF208331hypothetical protein LOC100265325-2e-35At5g30510RPS1 (RIBOSOMAL PROTEIN S1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.8GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.697.6GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.395.2GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.194.6GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.993.8GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.793.0GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1389.1.S1_at, orthologous to the query gene, 1608691_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5576.3Gma.1389.1.S1_atAt1g78630--4e-48At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.9198.6Gma.1355.1.S1_atAt1g78630--1e-4At3g54210ribosomal protein L17 family proteinO.I.H.G.S.X.
0.8392.5Gma.7729.1.S1_atAt1g78630--2e+0At2g03040transmembrane protein-relatedO.I.H.G.S.X.
0.7790.3Gma.8261.1.A1_s_atAt1g78630--1e-1At5g14910heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.6382.9Gma.10122.1.A1_atAt1g78630--3e-8At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.
0.5778.8Gma.10595.1.S1_atAt1g78630--2e-40At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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