Co-expression analysis

Gene ID 1608691_at
Gene name hypothetical protein LOC100248623
Homology with ArabidopsisSimilar to At1g78630: emb1473 (embryo defective 1473) (HF=6e-27)
Module size 6 genes
NF 0.82
%ile 98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.991608691_atCB345817hypothetical protein LOC100248623-6e-27At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.9198.80.991616390_atCF211469hypothetical protein LOC100248042-1e-41At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.8394.60.991621569_atCD801894hypothetical protein LOC100257626-4e-7At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.7792.30.991614138_atCA815957hypothetical protein LOC100254839-3e-14At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.6787.90.991620854_atCA818411hypothetical protein LOC100258321-7e-12At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.
0.5072.70.991622193_atCF208331hypothetical protein LOC100265325-2e-35At5g30510RPS1 (RIBOSOMAL PROTEIN S1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.8GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.697.6GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.395.2GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.194.6GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.993.8GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.793.0GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g78630, orthologous to the query gene, 1608691_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g78630844199emb1473 (embryo defective 1473)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAPO.I.H.G.S.X.
0.9396.4At2g3345081791050S ribosomal protein L28, chloroplast (CL28)F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPFO.I.H.G.S.X.
0.9296.0At1g3568084047250S ribosomal protein L21, chloroplast / CL21 (RPL21)F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMFO.I.H.G.S.X.
0.9296.0At4g01310827947ribosomal protein L5 family proteinF:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFMO.I.H.G.S.X.
0.9195.6At1g79850844324RPS17 (RIBOSOMAL PROTEIN S17)nuclear-encoded 30S chloroplast ribosomal protein S17O.I.H.G.S.X.
0.9195.6At1g07320837243RPL4encodes a plastid ribosomal protein L4O.I.H.G.S.X.
0.9195.6At1g64510842759ribosomal protein S6 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOPO.I.H.G.S.X.
0.9095.1At2g33800817947ribosomal protein S5 family proteinF:structural constituent of ribosome, RNA binding;P:response to cadmium ion, response to cold, translation;C:in 8 components;BOMAFPO.I.H.G.S.X.
0.9095.1At2g43030818905ribosomal protein L3 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFPO.I.H.G.S.X.
0.9095.1At3g54210824588ribosomal protein L17 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFPO.I.H.G.S.X.
0.8994.6At5g47190834765ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMFO.I.H.G.S.X.
0.8994.6At3g1312082050030S ribosomal protein S10, chloroplast, putativeF:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPFO.I.H.G.S.X.
0.8894.0At1g48350841255ribosomal protein L18 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast envelope;BOPMO.I.H.G.S.X.
0.8793.5At3g52150824379RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBAO.I.H.G.S.X.
0.8793.5At4g24770828579RBP31 (31-KDA RNA BINDING PROTEIN)Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).O.I.H.G.S.X.
0.8592.4At1g05190839273emb2394 (embryo defective 2394)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPMO.I.H.G.S.X.
0.8592.4At5g14910831343heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.H.G.S.X.
0.8491.9At5g1432083128230S ribosomal protein S13, chloroplast (CS13)F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFAO.I.H.G.S.X.
0.8491.9At3g15190820750chloroplast 30S ribosomal protein S20, putativeF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPMO.I.H.G.S.X.
0.8391.4At1g74970843836RPS9 (RIBOSOMAL PROTEIN S9)ribosomal protein S9, nuclear encoded component of the chloroplast ribosomeO.I.H.G.S.X.
0.8190.4At1g29070839781ribosomal protein L34 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOFO.I.H.G.S.X.
0.7989.1At3g08740820021elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPAO.I.H.G.S.X.
0.7788.0At5g08280830724HEMC (HYDROXYMETHYLBILANE SYNTHASE)Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.O.I.H.G.S.X.
0.7687.4At5g13510831195ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMFO.I.H.G.S.X.
0.7586.9At1g75350843871emb2184 (embryo defective 2184)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.H.G.S.X.
0.7486.1At1g32990840194PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11O.I.H.G.S.X.
0.7385.5At3g116308203352-cys peroxiredoxin, chloroplast (BAS1)Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.O.I.H.G.S.X.
0.5368.6At5g30510833138RPS1 (RIBOSOMAL PROTEIN S1)F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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