Co-expression analysis

Gene ID 1608638_at
Gene name
Homology with ArabidopsisSimilar to At5g42223: - (HF=4e+0)
Module size 28 genes
NF 0.31
%ile 43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.98100.00.961608638_atCF404187--4e+0At5g42223-O.I.H.G.S.X.
0.5475.70.961615738_atCF206445.1--1e+0At5g67640unknown proteinO.I.H.G.S.X.
0.4361.50.961611191_atCF207954hypothetical protein LOC100264622-1e-60At5g11850protein kinase family proteinO.I.H.G.S.X.
0.4158.70.981611915_atBM438116hypothetical protein LOC100257368-2e-15At5g42620metalloendopeptidase/ zinc ion bindingO.I.H.G.S.X.
0.4158.70.981611391_atCF513307hypothetical protein LOC100256320-1e-15At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.
0.4057.70.971615788_atCF511058hypothetical protein LOC100250348-2e+0At5g47170unknown proteinO.I.H.G.S.X.
0.3954.90.981619595_atCF207822hypothetical protein LOC100256839-4e-39At4g04040MEE51 (maternal effect embryo arrest 51)O.I.H.G.S.X.
0.3954.90.981615991_s_atCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.3853.60.961616925_atCB349059hypothetical protein LOC100255820-7e-5At4g00740dehydration-responsive protein-relatedO.I.H.G.S.X.
0.3650.70.981611331_atCF201541.1hypothetical protein LOC100243930-7e-18At5g19980integral membrane family proteinO.I.H.G.S.X.
0.3650.70.971620677_atBQ797428hypothetical protein LOC100257709-1e+0At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.3039.40.971620765_atCF215290hypothetical protein LOC100266143-2e-124At1g20090ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)O.I.H.G.S.X.
0.3039.40.981611111_atCF207166hypothetical protein LOC100256502-3e-33At1g63500ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3039.40.981614216_atCF512284hypothetical protein LOC100260586-2e-72At1g53500MUM4 (MUCILAGE-MODIFIED 4)O.I.H.G.S.X.
0.2837.70.981611271_atCF208856similar to CHR4/MI-2-LIKE (chromatin remodeling 4); ATP binding / DNA binding / chromatin binding / helicase-4e+0At5g62780DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2837.70.981609452_atBQ794280hypothetical protein LOC100249768-3e-1At4g31460ribosomal protein L28 family proteinO.I.H.G.S.X.
0.2837.70.981621252_atCB978314hypothetical protein LOC100263936-2e-8At3g08620KH domain-containing proteinO.I.H.G.S.X.
0.2837.70.981618802_s_atCF205022.1hypothetical protein LOC100264326-9e-4At1g34780ATAPRL4 (APR-like 4)O.I.H.G.S.X.
0.2632.00.971609109_atCB922980hypothetical protein LOC100249946-3e-2At1g05720selenoprotein family proteinO.I.H.G.S.X.
0.2530.50.971616913_atBQ796394hypothetical protein LOC100250143-7e-2At5g05570transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2428.70.981613489_atCF403663--5e+0At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)O.I.H.G.S.X.
0.2327.50.971607780_x_atCK138248.1hypothetical protein LOC100262965-3e+0At5g08505-O.I.H.G.S.X.
0.2124.00.981614110_s_atCD801616cullin 1-2e-19At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.2022.40.971619832_atCA818684hypothetical protein LOC100240976-1e-24At3g44660hda10 (histone deacetylase 10)O.I.H.G.S.X.
0.2022.40.981615702_atBQ797006hypothetical protein LOC100268087-4e-5At1g17980nucleotidyltransferase family proteinO.I.H.G.S.X.
0.1819.40.971616131_atCB973358similar to Os01g0104000-1e+0At1g11470-O.I.H.G.S.X.
0.1616.70.971622789_x_atCF206467.1--4e+1At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.1515.60.981619938_atCF514664hypothetical protein LOC100254408-2e-1At3g51950zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.6GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.390.7GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.886.0GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.784.7GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.784.7GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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