Co-expression analysis

Gene ID	1608613_at
Gene name	hypothetical protein LOC100248974
Homology with Arabidopsis	Similar to At5g35530: 40S ribosomal protein S3 (RPS3C) (HF=9e-1)
Module size	30 genes
NF	0.33
%ile	47.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.91	1608613_at	CF512345	hypothetical protein LOC100248974	-	9e-1	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.62	83.3	0.92	1611169_at	CF517205	hypothetical protein LOC100259067	-	8e-2	At3g13540	ATMYB5 (MYB DOMAIN PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.95	1621540_at	CB973791	hypothetical protein LOC100265913	-	2e-33	At5g53480	importin beta-2, putative	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.92	1617341_s_at	CF212973	hypothetical protein LOC100262769	-	1e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1607801_at	CB035881	hypothetical protein LOC100244785	-	5e+0	At5g63460	SAP domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.93	1614695_at	CB980641	-	-	1e+0	At4g08485	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1607035_at	CF213519	hypothetical protein LOC100250837	-	2e-17	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1612709_at	CB002728	-	-	2e+0	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1608938_at	CB002728	hypothetical protein LOC100257586	-	2e+0	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1614633_at	CB978076	similar to TGA-type basic leucine zipper protein TGA2.1	-	1e-16	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1610495_at	CB980163	hypothetical protein LOC100244069	-	8e-20	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	1619258_at	CF517798	hypothetical protein LOC100255734	-	6e+0	At5g63480	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1613873_at	CF518926	hypothetical protein LOC100241173	-	5e-20	At1g52320	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1608757_at	CB349275	hypothetical protein LOC100266172	-	3e-17	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1616311_at	CF608715	hypothetical protein LOC100243463	-	5e-21	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.95	1618118_a_at	CF207254	-	-	3e-30	At1g79930	HSP91	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1615684_at	CF604666	hypothetical protein LOC100244706	-	1e-38	At1g67170	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1620546_at	CF604129	similar to T5E21.11	-	5e-46	At1g14610	TWN2 (TWIN 2)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1613033_at	CB972358	hypothetical protein LOC100259176	-	2e-11	At5g66420	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1611434_at	CF603154	hypothetical protein LOC100247199	-	5e-16	At4g24220	VEP1 (VEIN PATTERNING 1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1615851_at	CD713329	hypothetical protein LOC100261174	-	6e-12	At5g16290	acetolactate synthase small subunit, putative	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1607281_at	CB976932	hypothetical protein LOC100247365	-	5e-115	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1609412_at	CF516257	hypothetical protein LOC100251928	-	7e-86	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1607199_at	CF514094	hypothetical protein LOC100264786	-	2e-1	At1g03290	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.93	1621767_at	CB978804	hypothetical protein LOC100264940	-	5e+0	At4g10240	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1609738_at	CF518474	similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding	-	1e+0	At4g17565	F-box family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1612078_at	CB977986	-	-	1e+0	At5g10740	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1619387_at	CF372302	hypothetical protein LOC100265639	-	3e-76	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1619995_at	BQ796015	hypothetical protein LOC100259910	-	7e-19	At4g36800	RCE1 (RUB1 CONJUGATING ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.94	1611589_at	CF603716	hypothetical protein LOC100241492	-	2e-61	At3g06670	binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.9	87.2	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.6	83.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.4	79.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.4	79.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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