Co-expression analysis

Gene ID	1608593_at
Gene name	hypothetical protein LOC100254837
Homology with Arabidopsis	Similar to At2g27340: - (HF=1e+0)
Module size	8 genes
NF	0.12
%ile	19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	0.97	1608593_at	CB981729	hypothetical protein LOC100254837	-	1e+0	At2g27340	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1610014_at	CF405435	hypothetical protein LOC100265580	-	2e+0	At2g36620	RPL24A (ribosomal protein L24)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1622187_at	CF516794	hypothetical protein LOC100262936	-	4e-119	At3g18190	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1606856_at	CF516128	hypothetical protein LOC100250494	-	7e-27	At5g46630	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.98	1613245_s_at	CD802128	similar to 60S ribosomal protein L11 (RPL11B)	-	7e-108	At3g58700	60S ribosomal protein L11 (RPL11B)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.98	1614608_at	CF212155	similar to protein transport protein Sec24, putative	-	4e-10	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.98	1610625_at	CD802063	hypothetical protein LOC100259247	-	6e-30	At4g08960	phosphotyrosyl phosphatase activator (PTPA) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.98	1622788_at	CB920325	hypothetical protein LOC100262286	-	1e-1	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.6	92.5	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.3	90.7	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.1	89.1	GSM436374	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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