Co-expression analysis

Gene ID 1608587_at
Gene name hypothetical protein LOC100248850
Homology with ArabidopsisSimilar to At5g66210: CPK28 (HF=9e-21)
Module size 7 genes
NF 0.15
%ile 23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.971608587_atCD799705hypothetical protein LOC100248850-9e-21At5g66210CPK28O.I.H.G.S.X.
0.3650.70.971621655_atCA817336hypothetical protein LOC100243738-3e-2At5g51670unknown proteinO.I.H.G.S.X.
0.3345.70.971622425_atCB971457similar to TIP1 (TIP GROWTH DEFECTIVE 1)-2e-5At5g20350TIP1 (TIP GROWTH DEFECTIVE 1)O.I.H.G.S.X.
0.1515.60.981621841_atBQ796797hypothetical protein LOC100258708-9e-3Atcg01000-O.I.H.G.S.X.
0.1313.30.981619905_atCF404235hypothetical protein LOC100263242-2e-1At2g34160nucleic acid bindingO.I.H.G.S.X.
0.077.80.981619154_atCF212140hypothetical protein LOC100246237-1e-7At4g25770unknown proteinO.I.H.G.S.X.
0.066.80.981621035_atCB006610hypothetical protein LOC100249467-4e-18At1g04210leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.9GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436405V. riparia (VR, PI588259) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436418V. riparia (VR, PI588259) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM436403V. riparia (VR, PI588259) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436407V. riparia (VR, PI588259) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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