Co-expression analysis

Gene ID	1608585_x_at
Gene name	proline-rich cell wall protein-like
Homology with Arabidopsis	Similar to At3g07910: - (HF=7e-7)
Module size	6 genes
NF	0.91
%ile	99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.98	1617556_s_at	BQ797260	proline-rich cell wall protein-like /// hypothetical protein LOC100245999	-	3e-2	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.98	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1618595_at	BQ798258	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
2.5	91.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5296.2.S1_at, orthologous to the query gene, 1608585_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.5296.2.S1_at	At3g07910	-	-	1e+0	At2g25295	LCR81 (Low-molecular-weight cysteine-rich 81)	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.2270.3.S1_a_at	At3g07910	-	-	3e-1	At2g24480	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.30811.1.S1_at	At3g07910	-	-	2e-1	At3g19070	cell wall protein-related	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.57555.1.S1_at	At3g07910	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.112946.1.S1_at	At3g07910	-	-	1e-15	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.18931.2.S1_x_at	At3g07910	-	-	2e-11	At5g47870	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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