Co-expression analysis

Gene ID	1608585_x_at
Gene name	proline-rich cell wall protein-like
Homology with Arabidopsis	Similar to At3g07910: - (HF=7e-7)
Module size	6 genes
NF	0.91
%ile	99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.98	1617556_s_at	BQ797260	proline-rich cell wall protein-like /// hypothetical protein LOC100245999	-	3e-2	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.98	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1618595_at	BQ798258	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
2.5	91.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.92521.1.S1_at, orthologous to the query gene, 1608585_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	95.1	PtpAffx.92521.1.S1_at	At3g07910	hypothetical protein	-	5e-3	At3g07910	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.5734.2.S1_s_at	At3g07910	hypothetical protein	-	6e-33	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.4009.1.S1_at	At3g07910	hypothetical protein	-	5e-29	At4g16765	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.7537.1.S1_x_at	At3g07910	hypothetical protein	-	6e-57	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.6768.1.S1_at	At3g07910	hypothetical protein	-	1e-56	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.61580.1.S1_at	At3g07910	hypothetical protein	-	8e-53	At2g15400	NRPE3B	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.1976.1.S1_s_at	At3g07910	hypothetical protein	-	5e-16	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.7537.1.S1_at	At3g07910	hypothetical protein	-	6e-57	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.97555.1.S1_s_at	At3g07910	hypothetical protein	-	7e-28	At4g27490	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.8152.1.S1_at	At3g07910	hypothetical protein	-	2e-25	At5g19350	RNA-binding protein 45 (RBP45), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.15609.2.S1_a_at	At3g07910	hypothetical protein	-	8e-50	At1g64040	TOPP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.4711.1.S1_s_at	At3g07910	hypothetical protein	-	1e-34	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.120271.1.S1_at	At3g07910	hypothetical protein	-	4e-10	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.33062.1.A1_at	At3g07910	hypothetical protein	-	3e-14	At5g25757	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.2403.1.S1_s_at	At3g07910	hypothetical protein	-	1e-14	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.2434.1.S1_x_at	At3g07910	hypothetical protein	-	2e-22	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.207918.1.S1_at	At3g07910	hypothetical protein	-	1e-19	At1g48170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.6879.1.S1_x_at	At3g07910	hypothetical protein	-	5e-62	At5g59850	40S ribosomal protein S15A (RPS15aF)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.136933.1.S1_s_at	At3g07910	hypothetical protein	-	3e-5	At1g64350	SEH1H	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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