CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608585_x_at

Gene name proline-rich cell wall protein-like
Homology with Arabidopsis Similar to At3g07910: - (HF=7e-7)

Module size 6 genes

NF 0.91

%ile 99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.99 1608585_x_at BQ797013 proline-rich cell wall protein-like - 7e-7 At3g07910 - O.I. H.G. S.X.
0.91 98.8 0.98 1617556_s_at BQ797260 proline-rich cell wall protein-like /// hypothetical protein LOC100245999 - 3e-2 At1g76930 ATEXT4 (EXTENSIN 4) O.I. H.G. S.X.
0.91 98.8 0.98 1621251_s_at BQ795002 hypothetical protein LOC100265471 - 2e+1 Atmg00500 - O.I. H.G. S.X.
0.83 94.6 0.98 1618595_at BQ798258 hypothetical protein LOC100248440 - 5e-1 At4g10950 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.83 94.6 0.99 1615212_at CF406027 ripening-related protein-like - 8e+0 At5g64040 PSAN O.I. H.G. S.X.
0.67 87.9 0.98 1610418_at BQ798078 hypothetical protein LOC100245385 - 8e-13 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.8 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147684 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 13
2.5 91.9 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, Gma.9659.1.S1_at, orthologous to the query gene, 1608585_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 66.6 Gma.9659.1.S1_at At3g07910 - - 6e+0 At5g07700 MYB76 (myb domain protein 76) O.I. H.G. S.X.
0.57 78.8 GmaAffx.93524.1.S1_s_at At3g07910 - - 1e-17 At5g56670 40S ribosomal protein S30 (RPS30C) O.I. H.G. S.X.
0.53 74.2 Gma.15476.1.S1_at At3g07910 - - 1e-56 At3g52580 40S ribosomal protein S14 (RPS14C) O.I. H.G. S.X.
0.31 42.2 Gma.11038.1.S1_at At3g07910 - - 6e-1 At1g15630 unknown protein O.I. H.G. S.X.
0.30 40.4 GmaAffx.89191.1.A1_x_at At3g07910 - - 1e-20 At3g08520 60S ribosomal protein L41 (RPL41D) O.I. H.G. S.X.
0.28 39.0 Gma.4208.2.S1_at At3g07910 - - 2e-34 At1g22780 PFL (POINTED FIRST LEAVES) O.I. H.G. S.X.
0.27 35.7 Gma.15928.1.S1_at At3g07910 - - 1e-9 At3g59650 mitochondrial ribosomal protein L51/S25/CI-B8 family protein O.I. H.G. S.X.
0.23 29.9 Gma.11305.1.S1_at At3g07910 - - 1e-172 At2g20140 26S protease regulatory complex subunit 4, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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