CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608585_x_at

Gene name proline-rich cell wall protein-like
Homology with Arabidopsis Similar to At3g07910: - (HF=7e-7)

Module size 6 genes

NF 0.91

%ile 99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.99 1608585_x_at BQ797013 proline-rich cell wall protein-like - 7e-7 At3g07910 - O.I. H.G. S.X.
0.91 98.8 0.98 1617556_s_at BQ797260 proline-rich cell wall protein-like /// hypothetical protein LOC100245999 - 3e-2 At1g76930 ATEXT4 (EXTENSIN 4) O.I. H.G. S.X.
0.91 98.8 0.98 1621251_s_at BQ795002 hypothetical protein LOC100265471 - 2e+1 Atmg00500 - O.I. H.G. S.X.
0.83 94.6 0.98 1618595_at BQ798258 hypothetical protein LOC100248440 - 5e-1 At4g10950 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.83 94.6 0.99 1615212_at CF406027 ripening-related protein-like - 8e+0 At5g64040 PSAN O.I. H.G. S.X.
0.67 87.9 0.98 1610418_at BQ798078 hypothetical protein LOC100245385 - 8e-13 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.8 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147684 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 13
2.5 91.9 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g07910, orthologous to the query gene, 1608585_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g07910 819982 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. H.G. S.X.
0.46 59.8 At3g46560 823809 TIM9 Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. O.I. H.G. S.X.
0.29 30.3 At2g45710 819179 40S ribosomal protein S27 (RPS27A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus, plasma membrane;MOPFA O.I. H.G. S.X.
0.13 5.8 At3g43980 823515 40S ribosomal protein S29 (RPS29A) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPF O.I. H.G. S.X.
0.11 4.1 At3g52730 824439 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial envelope, mitochondrion, mitochondrial respiratory chain complex III, membrane;PFMO O.I. H.G. S.X.
0.11 4.1 At5g27770 832839 60S ribosomal protein L22 (RPL22C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane, membrane;MFOP O.I. H.G. S.X.
0.05 1.1 At2g36160 818188 40S ribosomal protein S14 (RPS14A) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane;BOPMAF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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