Co-expression analysis

Gene ID	1608579_at
Gene name	hypothetical protein LOC100245274
Homology with Arabidopsis	Similar to At5g60290: unknown protein (HF=2e+0)
Module size	7 genes
NF	0.04
%ile	8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.89	1608579_at	CF515265	hypothetical protein LOC100245274	-	2e+0	At5g60290	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1621966_at	CD801280	hypothetical protein LOC100245849	-	4e+0	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.89	1607228_at	CF515176	hypothetical protein LOC100245274	-	1e-1	At3g21560	UGT84A2	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.90	1612444_at	CF214623	hypothetical protein LOC100262819	-	7e-3	At1g70890	MLP43 (MLP-LIKE PROTEIN 43)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.89	1615174_s_at	CD011073	leucoanthocyanidin reductase 2	-	8e+0	At5g38080	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.90	1608133_at	CA809505	hypothetical protein LOC100244452	-	1e-33	At5g59370	ACT4 (ACTIN 4)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.92	1606765_at	CD715653	hypothetical protein LOC100245849	-	4e-10	At1g13700	glucosamine/galactosamine-6-phosphate isomerase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	98.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.0	98.0	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
2.2	89.9	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
2.2	89.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.1	89.1	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.1	89.1	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.0	88.2	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage