Co-expression analysis

Gene ID 1608560_at
Gene name hypothetical protein LOC100250989
Homology with ArabidopsisSimilar to At3g09890: ankyrin repeat family protein (HF=3e+0)
Module size 6 genes
NF 0.12
%ile 20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4666.50.961608560_atCF405443hypothetical protein LOC100250989-3e+0At3g09890ankyrin repeat family proteinO.I.H.G.S.X.
0.3853.60.961620176_atCF209156hypothetical protein LOC100264829-2e-3At4g02450glycine-rich proteinO.I.H.G.S.X.
0.1515.60.961607835_atCB978785similar to transducin family protein / WD-40 repeat family protein-1e+0At3g49750AtRLP44 (Receptor Like Protein 44)O.I.H.G.S.X.
0.077.80.961614150_atCF216054--1e+0At2g28630KCS12 (3-KETOACYL-COA SYNTHASE 12)O.I.H.G.S.X.
0.077.80.961613000_atCF511400--4e+0At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)O.I.H.G.S.X.
0.066.80.961607279_atCF212545hypothetical protein LOC100242386-4e-1At1g64750ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.390.7GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.987.2GSM147686Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation15Link to GEO
1.987.2GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.886.0GSM436401V. riparia (VR, PI588259) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436397V. riparia (VR, PI588259) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436357Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM436352Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.51229.1.S1_at, orthologous to the query gene, 1608560_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9498.9TaAffx.51229.1.S1_atAt3g09890--2e+0At5g57720transcriptional factor B3 family proteinO.I.H.G.S.X.
0.6182.0TaAffx.57313.1.S1_atAt3g09890--1e+0At5g44080bZIP transcription factor family proteinO.I.H.G.S.X.
0.4464.5TaAffx.129077.1.A1_atAt3g09890--6e-5At2g46790APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9)O.I.H.G.S.X.
0.4058.4TaAffx.58364.1.S1_atAt3g09890--2e+1At4g10610CID12O.I.H.G.S.X.
0.3956.1TaAffx.5994.1.S1_atAt3g09890--1e+1At5g41400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3549.8Ta.24611.1.S1_atAt3g09890--1e+0At5g17150-O.I.H.G.S.X.
0.3549.8TaAffx.77845.1.S1_atAt3g09890--3e-1At5g67500VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)O.I.H.G.S.X.
0.2125.5TaAffx.17257.3.A1_atAt3g09890--4e+0At4g08730unknown proteinO.I.H.G.S.X.
0.1517.1Ta.9465.2.A1_atAt3g09890--1e-3At2g40110yippee family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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