CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608560_at

Gene name hypothetical protein LOC100250989
Homology with Arabidopsis Similar to At3g09890: ankyrin repeat family protein (HF=3e+0)

Module size 6 genes

NF 0.12

%ile 20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 66.5 0.96 1608560_at CF405443 hypothetical protein LOC100250989 - 3e+0 At3g09890 ankyrin repeat family protein O.I. H.G. S.X.
0.38 53.6 0.96 1620176_at CF209156 hypothetical protein LOC100264829 - 2e-3 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.15 15.6 0.96 1607835_at CB978785 similar to transducin family protein / WD-40 repeat family protein - 1e+0 At3g49750 AtRLP44 (Receptor Like Protein 44) O.I. H.G. S.X.
0.07 7.8 0.96 1614150_at CF216054 - - 1e+0 At2g28630 KCS12 (3-KETOACYL-COA SYNTHASE 12) O.I. H.G. S.X.
0.07 7.8 0.96 1613000_at CF511400 - - 4e+0 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) O.I. H.G. S.X.
0.06 6.8 0.96 1607279_at CF212545 hypothetical protein LOC100242386 - 4e-1 At1g64750 ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.3 90.7 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.9 87.2 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
1.9 87.2 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.8 86.0 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, HT07K23u_at, orthologous to the query gene, 1608560_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 53.1 HT07K23u_at At3g09890 - - 1e+0 At5g19250 unknown protein O.I. H.G. S.X.
0.35 45.1 Contig13212_at At3g09890 - - 5e-5 At4g00830 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.29 35.5 Contig18767_at At3g09890 - - 2e+0 At4g12030 bile acid:sodium symporter family protein O.I. H.G. S.X.
0.26 30.4 Contig11518_at At3g09890 - - 5e-9 At1g63500 ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.
0.20 21.1 Contig9479_s_at At3g09890 - - 2e+0 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) O.I. H.G. S.X.
0.19 19.6 Contig7283_at At3g09890 - - 5e-8 At2g26760 CYCB1 O.I. H.G. S.X.
0.09 7.4 Contig14349_at At3g09890 - - 1e+1 Atmg00010 - O.I. H.G. S.X.
0.08 6.5 Contig12155_at At3g09890 - - 2e-4 At5g15640 mitochondrial substrate carrier family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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