Co-expression analysis

Gene ID	1608560_at
Gene name	hypothetical protein LOC100250989
Homology with Arabidopsis	Similar to At3g09890: ankyrin repeat family protein (HF=3e+0)
Module size	6 genes
NF	0.12
%ile	20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.5	0.96	1608560_at	CF405443	hypothetical protein LOC100250989	-	3e+0	At3g09890	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1620176_at	CF209156	hypothetical protein LOC100264829	-	2e-3	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1607835_at	CB978785	similar to transducin family protein / WD-40 repeat family protein	-	1e+0	At3g49750	AtRLP44 (Receptor Like Protein 44)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.96	1614150_at	CF216054	-	-	1e+0	At2g28630	KCS12 (3-KETOACYL-COA SYNTHASE 12)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.96	1613000_at	CF511400	-	-	4e+0	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.96	1607279_at	CF212545	hypothetical protein LOC100242386	-	4e-1	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
1.9	87.2	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.51898.1.S1_at, orthologous to the query gene, 1608560_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.51898.1.S1_at	At3g09890	-	-	3e+0	At5g26630	MADS-box protein (AGL35)	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.49246.1.S1_at	At3g09890	-	-	4e+0	At3g44718	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.16744.1.S1_at	At3g09890	-	-	2e-18	At1g68070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.3329.3.S1_at	At3g09890	-	-	1e+0	At5g36722	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.9550.1.S1_at	At3g09890	-	-	3e+0	At5g52690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.12349.1.S1_at	At3g09890	-	-	2e-18	At1g75850	VPS35B (VPS35 HOMOLOG B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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