Co-expression analysis

Gene ID	1608533_at
Gene name	hypothetical protein LOC100242285
Homology with Arabidopsis	Similar to At1g73640: AtRABA6a (Arabidopsis Rab GTPase homolog A6a) (HF=2e-18)
Module size	18 genes
NF	0.19
%ile	27.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	0.94	1608533_at	CF212662	hypothetical protein LOC100242285	-	2e-18	At1g73640	AtRABA6a (Arabidopsis Rab GTPase homolog A6a)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1616258_at	CF207751	hypothetical protein LOC100253120	-	2e-6	At2g44660	transferase, transferring glycosyl groups / transferase, transferring hexosyl groups	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1609764_at	CB978631	-	-	3e-14	At3g48710	-	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1610250_at	CB344696	hypothetical protein LOC100242439	-	7e+0	At5g24790	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1618093_a_at	CF405418	hypothetical protein LOC100252982	-	4e+0	Atmg00130	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1616818_s_at	BQ800067	hypothetical protein LOC100245710	-	3e+0	At2g33006	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1620782_at	CB973165	-	-	9e-27	At1g77460	binding	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1606594_at	CB970566	hypothetical protein LOC100250099	-	5e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1613377_at	CB910700	hypothetical protein LOC100243326	-	4e+0	At3g09350	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1621391_at	CD801716	hypothetical protein LOC100251148	-	4e+0	At5g47980	transferase family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1610752_at	CF209288	hypothetical protein LOC100246682	-	1e-17	At3g18030	ATHAL3A	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.96	1621315_at	CF405616	hypothetical protein LOC100245710	-	1e-1	At5g46950	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1617457_at	CD012455	hypothetical protein LOC100267543	-	5e+0	At5g02240	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1615508_s_at	BQ800626	similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III	-	2e+0	At2g22426	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1610924_at	BQ799924	hypothetical protein LOC100248224	-	1e+0	At1g35410	-	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1613895_at	CF513745	hypothetical protein LOC100241488	-	1e-4	At1g11520	pliceosome associated protein-related	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.97	1622722_at	CF209124	-	-	4e-1	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.97	1613106_at	BQ798031	hypothetical protein LOC100249056	-	1e+0	At3g60890	ZPR2 (LITTLE ZIPPER 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage