Co-expression analysis

Gene ID	1608449_at
Gene name	hypothetical protein LOC100247109
Homology with Arabidopsis	Similar to At1g19580: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) (HF=6e-72)
Module size	17 genes
NF	0.39
%ile	58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.97	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1608703_at	CF510814	ubiquitin-activating enzyme	-	1e-24	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1615735_at	CD797265	hypothetical protein LOC100259271	-	0	At1g50370	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.98	1622378_s_at	CB974439	hypothetical protein LOC100252146	-	5e-10	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1616861_s_at	BQ792575	hypothetical protein LOC100244246	-	9e-11	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1620906_s_at	CB972641	hypothetical protein LOC100246670	-	2e+0	At1g32630	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1616941_at	CD713937	hypothetical protein LOC100248410	-	2e-39	At1g07830	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1607275_at	CF210833	hypothetical protein LOC100261812	-	7e-13	At3g15980	coatomer protein complex, subunit beta 2 (beta prime), putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.99	1614840_at	CF415070	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1612039_at	BQ799884	hypothetical protein LOC100266651	-	1e-18	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1621991_at	CB978460	hypothetical protein LOC100243393	-	1e-1	At2g41060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1614599_at	CF513204	hypothetical protein LOC100248579	-	1e-25	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1618577_at	CB969753	hypothetical protein LOC100257605	-	5e-7	At2g03290	protein transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1610373_at	CF517404	hypothetical protein LOC100242638	-	1e-20	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	AFFX-Vvi-actin-5_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
1.7	84.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.6	83.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.6	83.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.5	81.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.5	81.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.5	81.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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