Co-expression analysis

Gene ID	1608374_at
Gene name
Homology with Arabidopsis	Similar to At4g03153: kinase interacting family protein (HF=3e-1)
Module size	18 genes
NF	0.43
%ile	63.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.5	0.98	1608374_at	CF214105	-	-	3e-1	At4g03153	kinase interacting family protein	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.98	1617034_at	CB342279	hypothetical protein LOC100248287	-	1e+0	At5g09480	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.98	1612043_at	CF210844	hypothetical protein LOC100256975	-	5e-41	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.98	1607297_at	CB975238	-	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1614072_at	BQ799158	hypothetical protein LOC100250187	-	1e+0	At1g56680	glycoside hydrolase family 19 protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1613730_at	CB036143	hypothetical protein LOC100264670	-	2e-43	At2g26460	RED family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1606955_at	CD801587	hypothetical protein LOC100264575	-	1e+0	At5g17760	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.99	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1621288_at	CB972014	hypothetical protein LOC100252015	-	2e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.99	1613582_at	CF204478.1	hypothetical protein LOC100261825	-	6e-12	At5g14170	CHC1	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1619277_at	CD800694	hypothetical protein LOC100267656	-	8e+0	At5g05550	transcription factor	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1620963_at	CF403847	hypothetical protein LOC100247592	-	7e-49	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.99	1619972_at	CF511808	hypothetical protein LOC100263609	-	2e-1	At5g56770	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.99	1613731_at	CF513972	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.99	1606841_s_at	CF513194	similar to UBC13A/UBC35 (UBIQUITIN-CONJUGATING ENZYME35); protein binding / ubiquitin-protein ligase	-	1e-62	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1612431_at	CA810329	-	-	1e+0	At2g16720	MYB7 (MYB DOMAIN PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1607264_at	CF403300	hypothetical protein LOC100248449	-	7e-8	At1g07705	transcription regulator	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.6	83.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.6	83.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.6	83.3	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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