CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608277_at

Gene name hypothetical protein LOC100249980
Homology with Arabidopsis Similar to At4g12230: esterase/lipase/thioesterase family protein (HF=3e-75)

Module size 6 genes

NF 0.43

%ile 63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1608277_at CA816391 hypothetical protein LOC100249980 - 3e-75 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.67 87.9 0.98 1606778_at CF607072 hypothetical protein LOC100261953 - 6e-30 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.61 83.2 0.98 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.46 66.5 0.98 1622000_s_at CF604800 hypothetical protein LOC100242169 - 1e+0 At3g27329 - O.I. H.G. S.X.
0.40 57.7 0.98 1608708_at CF211873 hypothetical protein LOC100255983 - 2e-9 At4g29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein O.I. H.G. S.X.
0.10 10.3 0.98 1618091_s_at CB973873 hypothetical protein LOC100255026 - 6e-3 At3g17020 universal stress protein (USP) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 98.2 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.9 97.9 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.2 94.9 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the rice gene, Os10g0169800, orthologous to the query gene, 1608277_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 Os10g0169800 At4g12230 - Alpha/beta hydrolase fold domain containingprotein 7e-32 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.17 12.6 Os01g0835600 At4g12230 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-4 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) O.I. H.G. S.X.
0.15 10.3 Os02g0467700 At4g12230 - C terminus subunit of GlcA transferase 4e-1 At4g16710 glycosyltransferase family protein 28 O.I. H.G. S.X.
0.12 7.2 Os11g0175900 At4g12230 - Conserved hypothetical protein 4e-8 At3g61430 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) O.I. H.G. S.X.
0.09 4.9 Os01g0819900 At4g12230 - Protein kinase domain containing protein 2e-11 At2g40730 HEAT repeat-containing protein O.I. H.G. S.X.
0.08 4.2 Os03g0102400 At4g12230 - Conserved hypothetical protein 1e-15 At5g61450 2-phosphoglycerate kinase-related O.I. H.G. S.X.
0.07 3.7 Os01g0862300 At4g12230 - Sorting nexin 1 2e-20 At5g06140 SNX1 (SORTING NEXIN 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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