CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608277_at

Gene name hypothetical protein LOC100249980
Homology with Arabidopsis Similar to At4g12230: esterase/lipase/thioesterase family protein (HF=3e-75)

Module size 6 genes

NF 0.43

%ile 63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1608277_at CA816391 hypothetical protein LOC100249980 - 3e-75 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.67 87.9 0.98 1606778_at CF607072 hypothetical protein LOC100261953 - 6e-30 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.61 83.2 0.98 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.46 66.5 0.98 1622000_s_at CF604800 hypothetical protein LOC100242169 - 1e+0 At3g27329 - O.I. H.G. S.X.
0.40 57.7 0.98 1608708_at CF211873 hypothetical protein LOC100255983 - 2e-9 At4g29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein O.I. H.G. S.X.
0.10 10.3 0.98 1618091_s_at CB973873 hypothetical protein LOC100255026 - 6e-3 At3g17020 universal stress protein (USP) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 98.2 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.9 97.9 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.2 94.9 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the barley gene, Contig6023_s_at, orthologous to the query gene, 1608277_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 Contig6023_s_at At4g12230 - - 3e-12 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.50 66.9 Contig15978_at At4g12230 - - 4e-1 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) O.I. H.G. S.X.
0.40 53.1 Contig10218_at At4g12230 - - 2e+0 At2g44820 unknown protein O.I. H.G. S.X.
0.40 53.1 HX04E17u_s_at At4g12230 - - 1e+0 At5g12340 unknown protein O.I. H.G. S.X.
0.27 32.1 Contig10012_at At4g12230 - - 6e-8 At5g24630 BIN4 (brassinosteroid-insensitive4) O.I. H.G. S.X.
0.25 28.9 Contig12918_at At4g12230 - - 3e+1 At5g02280 synbindin, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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