Co-expression analysis

Gene ID	1608277_at
Gene name	hypothetical protein LOC100249980
Homology with Arabidopsis	Similar to At4g12230: esterase/lipase/thioesterase family protein (HF=3e-75)
Module size	6 genes
NF	0.43
%ile	63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1608708_at	CF211873	hypothetical protein LOC100255983	-	2e-9	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.98	1618091_s_at	CB973873	hypothetical protein LOC100255026	-	6e-3	At3g17020	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.9	97.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.73159.1.S1_at, orthologous to the query gene, 1608277_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	GmaAffx.73159.1.S1_at	At4g12230	-	-	1e-30	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	GmaAffx.29121.1.S1_at	At4g12230	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	GmaAffx.90621.1.S1_s_at	At4g12230	-	-	4e-50	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.56889.1.S1_s_at	At4g12230	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.7528.2.S1_at	At4g12230	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.38743.1.S1_at	At4g12230	-	-	4e-4	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.49	68.3	GmaAffx.55210.1.S1_at	At4g12230	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.91113.1.S1_s_at	At4g12230	-	-	1e-31	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.4155.2.S1_s_at	At4g12230	EREBP/AP2 transcription factor	-	1e-2	At1g53887	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.68425.1.S1_at	At4g12230	-	-	1e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.90994.1.S1_s_at	At4g12230	-	-	7e-12	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.92182.1.S1_s_at	At4g12230	-	-	9e-1	At1g69800	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.16282.4.S1_a_at	At4g12230	-	-	1e-20	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.68394.1.S1_at	At4g12230	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.58155.1.S1_at	At4g12230	-	-	2e-36	At4g32150	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.88360.1.S1_at	At4g12230	-	-	1e-7	At1g71980	protease-associated zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.38941.1.S1_at	At4g12230	-	-	8e-1	At1g02330	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.92886.1.S1_s_at	At4g12230	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.13243.1.S1_at	At4g12230	-	-	8e-5	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.82721.1.S1_at	At4g12230	-	-	6e-67	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.78964.1.S1_at	At4g12230	-	-	1e-3	At3g52660	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.89525.1.S1_s_at	At4g12230	-	-	3e-26	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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