CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608277_at

Gene name hypothetical protein LOC100249980
Homology with Arabidopsis Similar to At4g12230: esterase/lipase/thioesterase family protein (HF=3e-75)

Module size 6 genes

NF 0.43

%ile 63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1608277_at CA816391 hypothetical protein LOC100249980 - 3e-75 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.67 87.9 0.98 1606778_at CF607072 hypothetical protein LOC100261953 - 6e-30 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.61 83.2 0.98 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.46 66.5 0.98 1622000_s_at CF604800 hypothetical protein LOC100242169 - 1e+0 At3g27329 - O.I. H.G. S.X.
0.40 57.7 0.98 1608708_at CF211873 hypothetical protein LOC100255983 - 2e-9 At4g29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein O.I. H.G. S.X.
0.10 10.3 0.98 1618091_s_at CB973873 hypothetical protein LOC100255026 - 6e-3 At3g17020 universal stress protein (USP) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 98.2 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.9 97.9 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.2 94.9 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g12230, orthologous to the query gene, 1608277_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g12230 826831 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFV O.I. H.G. S.X.
0.83 91.4 At5g39510 833947 SGR4 (SHOOT GRAVITROPSIM 4) Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12. O.I. H.G. S.X.
0.75 86.9 At5g53530 835435 VPS26A (VACUOLAR PROTEIN SORTING 26A) Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. O.I. H.G. S.X.
0.59 74.7 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. O.I. H.G. S.X.
0.50 65.3 At3g09740 820132 SYP71 (SYNTAXIN OF PLANTS 71) syntaxin of plants 71 (SYP71) O.I. H.G. S.X.
0.33 38.1 At4g02080 827368 ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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