Co-expression analysis

Gene ID	1608213_at
Gene name	hypothetical protein LOC100245233
Homology with Arabidopsis	Similar to At2g26290: ARSK1 (root-specific kinase 1) (HF=9e-2)
Module size	19 genes
NF	0.40
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.96	1608213_at	CF209965	hypothetical protein LOC100245233	-	9e-2	At2g26290	ARSK1 (root-specific kinase 1)	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.97	1617238_at	CD800896	hypothetical protein LOC100258246	-	3e-27	At1g63430	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1611391_at	CF513307	hypothetical protein LOC100256320	-	1e-15	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1622512_at	CF208965	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1615577_at	CB340193	hypothetical protein LOC100256811	-	4e-92	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.98	1620765_at	CF215290	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1614933_at	CB003963	hypothetical protein LOC100252359	-	1e+0	At2g32450	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1620677_at	BQ797428	hypothetical protein LOC100257709	-	1e+0	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1621139_at	CB982951	hypothetical protein LOC100262947	-	3e-9	At5g08390	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1615788_at	CF511058	hypothetical protein LOC100250348	-	2e+0	At5g47170	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1621245_at	CD720943	hypothetical protein LOC100245681	-	1e+0	At4g10630	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1612757_at	CD801743	hypothetical protein LOC100241266	-	1e+0	At2g32560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1612154_at	CB970048	hypothetical protein LOC100255394	-	1e-74	At1g79500	2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1611331_at	CF201541.1	hypothetical protein LOC100243930	-	7e-18	At5g19980	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1611111_at	CF207166	hypothetical protein LOC100256502	-	3e-33	At1g63500	ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1615754_at	CF213398	-	-	3e-41	At5g65470	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1618802_s_at	CF205022.1	hypothetical protein LOC100264326	-	9e-4	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1621252_at	CB978314	hypothetical protein LOC100263936	-	2e-8	At3g08620	KH domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.3	90.7	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
2.1	89.1	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.0	88.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
1.8	86.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
1.8	86.0	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
1.8	86.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage