CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1608179_at

Gene name hypothetical protein LOC100260954
Homology with Arabidopsis Similar to At5g26700: germin-like protein, putative (HF=1e+0)

Module size 7 genes

NF 0.51

%ile 75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.43 61.5 0.96 1608179_at CB005049 hypothetical protein LOC100260954 - 1e+0 At5g26700 germin-like protein, putative O.I. H.G. S.X.
0.57 79.8 0.97 1620211_at CF513911 hypothetical protein LOC100261483 - 1e+0 At3g07565 DNA binding O.I. H.G. S.X.
0.53 75.2 0.98 1616023_at CB979152 hypothetical protein LOC100252512 - 1e-38 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.47 67.7 0.97 1616843_at CF606887 hypothetical protein LOC100252068 - 7e-17 At4g18460 D-Tyr-tRNA(Tyr) deacylase family protein O.I. H.G. S.X.
0.47 67.7 0.98 1620802_at CB976446 similar to putative pyruvate dehydrogenase E1 alpha subunit - 3e-89 At1g01090 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) O.I. H.G. S.X.
0.46 66.5 0.98 1609080_at BQ797210 hypothetical protein LOC100265018 - 9e-21 At5g54440 unknown protein O.I. H.G. S.X.
0.43 61.5 0.98 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.5 91.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51

Inter-species module comparison

A co-expression module including the maize gene, Zm.9386.1.A1_at, orthologous to the query gene, 1608179_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.9386.1.A1_at At5g26700 hypothetical protein LOC100275351 - 2e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.73 89.9 Zm.4340.1.A1_at At5g26700 orange pericarp2 - 2e-29 At4g27070 TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) O.I. H.G. S.X.
0.67 85.8 Zm.5691.1.A1_at At5g26700 - - 7e-4 At3g13850 LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) O.I. H.G. S.X.
0.61 79.5 ZmAffx.1081.1.A1_at At5g26700 spotted leaf protein 11 - 1e+1 At5g23950 C2 domain-containing protein O.I. H.G. S.X.
0.48 61.3 ZmAffx.1036.1.S1_at At5g26700 - - 1e-1 At2g43795 unknown protein O.I. H.G. S.X.
0.31 31.6 Zm.10867.1.A1_at At5g26700 - - 8e-2 At2g20350 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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