Co-expression analysis

Gene ID 1608179_at
Gene name hypothetical protein LOC100260954
Homology with ArabidopsisSimilar to At5g26700: germin-like protein, putative (HF=1e+0)
Module size 7 genes
NF 0.51
%ile 75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4361.50.961608179_atCB005049hypothetical protein LOC100260954-1e+0At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.5779.80.971620211_atCF513911hypothetical protein LOC100261483-1e+0At3g07565DNA bindingO.I.H.G.S.X.
0.5375.20.981616023_atCB979152hypothetical protein LOC100252512-1e-38At1g50140ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.4767.70.971616843_atCF606887hypothetical protein LOC100252068-7e-17At4g18460D-Tyr-tRNA(Tyr) deacylase family proteinO.I.H.G.S.X.
0.4767.70.981620802_atCB976446similar to putative pyruvate dehydrogenase E1 alpha subunit-3e-89At1g01090PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)O.I.H.G.S.X.
0.4666.50.981609080_atBQ797210hypothetical protein LOC100265018-9e-21At5g54440unknown proteinO.I.H.G.S.X.
0.4361.50.981615727_atCF205417.1hypothetical protein LOC100261981-9e-2At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.591.9GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436382Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM436383Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436377Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436362Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.58458.1.S1_at, orthologous to the query gene, 1608179_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8593.8TaAffx.58458.1.S1_atAt5g26700--3e+0At4g2589060S acidic ribosomal protein P3 (RPP3A)O.I.H.G.S.X.
0.5576.8Ta.17486.1.S1_atAt5g26700--1e+0At2g19570CDA1 (CYTIDINE DEAMINASE 1)O.I.H.G.S.X.
0.5475.5TaAffx.52324.1.S1_atAt5g26700--1e+0At2g21220auxin-responsive protein, putativeO.I.H.G.S.X.
0.5173.0TaAffx.81810.1.S1_atAt5g26700--2e+1At5g08710regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-relatedO.I.H.G.S.X.
0.5072.4TaAffx.58024.1.S1_atAt5g26700--4e+0At3g07310unknown proteinO.I.H.G.S.X.
0.4969.7Ta.7698.3.S1_atAt5g26700--2e+1At5g60615-O.I.H.G.S.X.
0.4969.7TaAffx.78823.1.S1_atAt5g26700--4e+0At5g26840unknown proteinO.I.H.G.S.X.
0.4869.0TaAffx.27185.1.S1_atAt5g26700--1e+0At1g68540oxidoreductase family proteinO.I.H.G.S.X.
0.4464.5Ta.24307.1.A1_atAt5g26700cytokinin dehydrogenase-1e+0At2g03570unknown proteinO.I.H.G.S.X.
0.4464.5TaAffx.85713.1.S1_atAt5g26700--4e+0At2g32710KRP4O.I.H.G.S.X.
0.4159.6TaAffx.114357.1.S1_atAt5g26700--1e+0At2g45670calcineurin B subunit-relatedO.I.H.G.S.X.
0.4058.4TaAffx.52385.1.S1_atAt5g26700--4e+0At1g05930DNA bindingO.I.H.G.S.X.
0.4058.4Ta.5770.2.S1_x_atAt5g26700--4e+0At2g44578protein binding / zinc ion bindingO.I.H.G.S.X.
0.3854.7TaAffx.51913.1.S1_x_atAt5g26700--8e-1At5g56110ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)O.I.H.G.S.X.
0.3549.8TaAffx.52986.1.S1_atAt5g26700--1e+1At3g44950glycine-rich proteinO.I.H.G.S.X.
0.3448.1TaAffx.628.1.A1_x_atAt5g26700--4e+0At5g15290integral membrane family proteinO.I.H.G.S.X.
0.3448.1TaAffx.129222.6.S1_atAt5g26700--8e-1At5g14750ATMYB66 (MYB DOMAIN PROTEIN 66)O.I.H.G.S.X.
0.3346.9TaAffx.27272.1.S1_atAt5g26700--4e+0At5g20165unknown proteinO.I.H.G.S.X.
0.3244.4TaAffx.51734.1.S1_x_atAt5g26700--2e+0At1g02780emb2386 (embryo defective 2386)O.I.H.G.S.X.
0.3142.7TaAffx.30005.1.S1_atAt5g26700--1e+0At4g00840zinc ion bindingO.I.H.G.S.X.
0.2939.2TaAffx.105943.1.S1_atAt5g26700--2e+1At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)O.I.H.G.S.X.
0.2735.6TaAffx.98862.1.S1_atAt5g26700--4e+0At2g33830dormancy/auxin associated family proteinO.I.H.G.S.X.
0.2735.6TaAffx.109026.1.S1_atAt5g26700--9e-1At4g35165unknown proteinO.I.H.G.S.X.
0.2735.6TaAffx.110179.1.S1_atAt5g26700--3e-8At5g16340AMP-binding protein, putativeO.I.H.G.S.X.
0.2633.6TaAffx.54204.1.S1_atAt5g26700--2e+1At5g13670nodulin MtN21 family proteinO.I.H.G.S.X.
0.1922.4TaAffx.8371.1.S1_atAt5g26700--4e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.1517.1Ta.24819.1.S1_atAt5g26700--3e+0At3g25240unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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