Co-expression analysis

Gene ID 1608179_at
Gene name hypothetical protein LOC100260954
Homology with ArabidopsisSimilar to At5g26700: germin-like protein, putative (HF=1e+0)
Module size 7 genes
NF 0.51
%ile 75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4361.50.961608179_atCB005049hypothetical protein LOC100260954-1e+0At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.5779.80.971620211_atCF513911hypothetical protein LOC100261483-1e+0At3g07565DNA bindingO.I.H.G.S.X.
0.5375.20.981616023_atCB979152hypothetical protein LOC100252512-1e-38At1g50140ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.4767.70.971616843_atCF606887hypothetical protein LOC100252068-7e-17At4g18460D-Tyr-tRNA(Tyr) deacylase family proteinO.I.H.G.S.X.
0.4767.70.981620802_atCB976446similar to putative pyruvate dehydrogenase E1 alpha subunit-3e-89At1g01090PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)O.I.H.G.S.X.
0.4666.50.981609080_atBQ797210hypothetical protein LOC100265018-9e-21At5g54440unknown proteinO.I.H.G.S.X.
0.4361.50.981615727_atCF205417.1hypothetical protein LOC100261981-9e-2At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.591.9GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436382Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM436383Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436377Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436362Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.33121.1.S1_at, orthologous to the query gene, 1608179_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5778.8GmaAffx.33121.1.S1_atAt5g26700--1e+1At5g42146unknown proteinO.I.H.G.S.X.
0.6986.8GmaAffx.45805.2.S1_atAt5g26700--2e-14At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6986.8Gma.6016.2.S1_s_atAt5g26700--6e-2At4g39230isoflavone reductase, putativeO.I.H.G.S.X.
0.6786.1Gma.9622.1.S1_atAt5g26700--2e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6786.1Gma.6550.2.S1_s_atAt5g26700--2e-14At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6483.4Gma.9622.1.S1_x_atAt5g26700--2e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6483.4Gma.6550.2.S1_x_atAt5g26700--2e-14At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6483.4Gma.6550.3.S1_s_atAt5g26700--1e-33At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6080.7Gma.6016.1.S1_s_atAt5g26700--4e-8At4g39230isoflavone reductase, putativeO.I.H.G.S.X.
0.5576.3GmaAffx.66680.1.S1_atAt5g26700--3e-4At1g27210bindingO.I.H.G.S.X.
0.4766.6GmaAffx.48245.1.S1_atAt5g26700--6e-1At4g38090unknown proteinO.I.H.G.S.X.
0.4057.1GmaAffx.91641.1.S1_s_atAt5g267004-coumarate:CoA ligase isoenzyme 2-1e-7At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.3142.2Gma.4928.1.S1_a_atAt5g267004-coumarate:CoA ligase isoenzyme 2-4e-9At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.1923.7Gma.6843.1.S1_atAt5g26700--2e-139At5g59290UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage