Co-expression analysis

Gene ID	1608178_s_at
Gene name	hypothetical protein LOC100242383
Homology with Arabidopsis	Similar to At3g43230: zinc finger (FYVE type) family protein (HF=5e-19)
Module size	8 genes
NF	0.25
%ile	34.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.98	1608178_s_at	CF210114	hypothetical protein LOC100242383	-	5e-19	At3g43230	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1615173_at	CF518560	hypothetical protein LOC100260965	-	1e-112	At4g35860	ATGB2 (GTP-BINDING 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1611075_at	BM436771	hypothetical protein LOC100246965	-	7e-5	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1616059_at	CF215666	hypothetical protein LOC100245604	-	7e-6	At4g24990	ATGP4	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1610715_s_at	CF212007	hypothetical protein LOC100258507	-	4e-56	At2g05630	autophagy 8d (APG8d)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1608283_at	CD799618	hypothetical protein LOC100258698	-	2e-1	At1g26795	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1607998_at	BQ793788	hypothetical protein LOC100245820	-	4e-24	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.98	1614062_at	CB982394	hypothetical protein LOC100245196	-	5e+0	At5g07630	lipid transporter	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.5	91.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.3	90.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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