Co-expression analysis

Gene ID	1608162_at
Gene name	hypothetical protein LOC100267451
Homology with Arabidopsis	Similar to At3g07110: 60S ribosomal protein L13A (RPL13aA) (HF=1e-54)
Module size	8 genes
NF	0.62
%ile	88.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	0.98	1608162_at	BQ796557	hypothetical protein LOC100267451	-	1e-54	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.98	1609803_s_at	CF202459.1	hypothetical protein LOC100255637	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1611713_s_at	CB347325	hypothetical protein LOC100265590	-	4e-10	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1622420_at	CF372296	hypothetical protein LOC100255637	-	8e-2	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1613162_at	CF514736	hypothetical protein LOC100261444	-	3e-20	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1610560_at	BQ797613	hypothetical protein LOC100258347	-	7e-52	At3g47370	40S ribosomal protein S20 (RPS20B)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1620069_s_at	CB969496	hypothetical protein LOC100248991	-	9e-51	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.99	1615150_at	CB973162	similar to 60S ribosomal protein L34	-	1e-34	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
2.6	92.5	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
2.3	90.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.1	89.1	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.0	88.2	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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