CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1607973_at

Gene name
Homology with Arabidopsis Similar to At4g18960: AG (AGAMOUS) (HF=7e-4)

Module size 15 genes

NF 0.76

%ile 97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1607973_at CB969561 - - 7e-4 At4g18960 AG (AGAMOUS) O.I. H.G. S.X.
0.97 99.9 0.98 1615925_at BQ793198 hypothetical protein LOC100260124 - 3e-4 At4g10020 AtHSD5 (hydroxysteroid dehydrogenase 5) O.I. H.G. S.X.
0.90 95.6 0.97 1614771_at CB346222 hypothetical protein LOC100242179 - 1e+0 At5g62200 embryo-specific protein-related O.I. H.G. S.X.
0.88 95.4 0.97 1610616_at CB921212 hypothetical protein LOC100260773 /// hypothetical protein LOC100252365 - 5e-3 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) O.I. H.G. S.X.
0.84 94.8 0.97 1621346_at CB978597 hypothetical protein LOC100263108 - 8e-2 At1g74440 unknown protein O.I. H.G. S.X.
0.79 92.7 0.97 1617980_at CB346475 - - 8e-1 At5g66800 unknown protein O.I. H.G. S.X.
0.77 92.3 0.97 1611173_at CB979091 hypothetical protein LOC100258969 - 1e+0 At3g25080 unknown protein O.I. H.G. S.X.
0.77 92.3 0.97 1614697_at CB346214 hypothetical protein LOC100255962 - 5e+0 At5g07550 GRP19 (GLYCINE-RICH PROTEIN 19) O.I. H.G. S.X.
0.75 91.3 0.97 1620307_at CB348708 hypothetical protein LOC100264814 - 2e-10 At2g33380 RD20 (RESPONSIVE TO DESSICATION 20) O.I. H.G. S.X.
0.73 90.8 0.96 1618312_at CB976210 hypothetical protein LOC100240958 - 8e-2 At1g22540 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.69 88.3 0.97 1621723_at CA817798 hypothetical protein LOC100248744 - 6e-14 At1g61110 anac025 (Arabidopsis NAC domain containing protein 25) O.I. H.G. S.X.
0.69 88.3 0.97 1622225_at BQ793105 hypothetical protein LOC100249321 - 3e+0 At3g07425 unknown protein O.I. H.G. S.X.
0.67 87.9 0.95 1613161_at BQ792976 hypothetical protein LOC100257921 - 3e+0 At4g18860 unknown protein O.I. H.G. S.X.
0.60 81.9 0.98 1619180_at CB976469 hypothetical protein LOC100252897 - 2e-14 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) O.I. H.G. S.X.
0.51 73.2 0.97 1619481_at CB348820 hypothetical protein LOC100256947 - 2e-2 At4g25140 OLEO1 (OLEOSIN 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 95.7 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.1 89.1 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
1.9 87.2 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM147738 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 67
1.8 86.0 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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