Co-expression analysis

Gene ID	1607945_at
Gene name	pectate lyase
Homology with Arabidopsis	Similar to At1g67750: pectate lyase family protein (HF=1e-39)
Module size	6 genes
NF	0.01
%ile	2.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.83	1607945_at	AF243475.1	pectate lyase	-	1e-39	At1g67750	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.92	1621848_at	CB339439	hypothetical protein LOC100241572	-	3e-10	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.93	1606461_at	CF203056.1	-	-	1e+0	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.82	1609001_at	CB977196	hypothetical protein LOC100258330	-	1e+0	At3g19660	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.92	1616547_at	BQ798895	hypothetical protein LOC100256265	-	5e-21	At5g23230	NIC2 (NICOTINAMIDASE 2)	O.I.	H.G.	S.X.	Please select
-	0.5	0.87	1610311_at	CF373485	similar to arabinogalactan-protein; AGP	-	1e-4	At2g33850	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
3.0	94.2	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.6	92.5	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.5	91.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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