Co-expression analysis

Gene ID	1607924_at
Gene name	hypothetical protein LOC100261557
Homology with Arabidopsis	Similar to At4g16580: catalytic (HF=3e-11)
Module size	9 genes
NF	0.45
%ile	67.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	0.99	1607924_at	CB971581	hypothetical protein LOC100261557	-	3e-11	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1616337_at	CB914494	hypothetical protein LOC100246803	-	1e-9	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.99	1609424_at	CD798745	hypothetical protein LOC100263956	-	7e-30	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1622223_at	BQ794199	hypothetical protein LOC100264264	-	1e-11	At1g67325	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1610112_at	CF514110	hypothetical protein LOC100251867	-	4e-67	At1g70160	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.99	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.99	1613537_at	CB916959	hypothetical protein LOC100242733	-	1e-14	At3g04610	FLK (flowering locus KH domain)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.99	1616823_at	CF608764	hypothetical protein LOC100257426	-	6e-7	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1622424_at	CA813635	hypothetical protein LOC100265980	-	9e-11	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.8	93.4	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
1.8	86.0	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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