Co-expression analysis

Gene ID	1607911_at
Gene name	hypothetical protein LOC100243725
Homology with Arabidopsis	Similar to At1g75330: OTC (ORNITHINE CARBAMOYLTRANSFERASE) (HF=3e-38)
Module size	6 genes
NF	0.59
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.98	1607911_at	BQ794094	hypothetical protein LOC100243725	-	3e-38	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1610737_at	CB346253	hypothetical protein LOC100255417	-	7e-49	At5g26360	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1618602_at	CD712496	hypothetical protein LOC100267246	-	4e-7	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.99	1613189_at	CB978637	hypothetical protein LOC100263471	-	8e-2	At1g58245	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1613303_at	CB977627	similar to plectin-related	-	3e-16	At2g26770	plectin-related	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1613901_at	CF510714	hypothetical protein LOC100254714	-	2e-2	At3g03340	UNE6 (unfertilized embryo sac 6)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.7	99.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.9	98.6	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.5	97.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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