Co-expression analysis

Gene ID	1607880_at
Gene name	hypothetical protein LOC100263570
Homology with Arabidopsis	Similar to At2g02800: APK2B (PROTEIN KINASE 2B) (HF=4e-2)
Module size	6 genes
NF	0.56
%ile	83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.89	1607880_at	BQ793902	hypothetical protein LOC100263570	-	4e-2	At2g02800	APK2B (PROTEIN KINASE 2B)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.88	1608159_at	CB969766	hypothetical protein LOC100242214	-	8e-14	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.87	1610941_at	CD714898	-	-	1e-11	At1g64950	CYP89A5	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.90	1614972_at	CB969853	hypothetical protein LOC100242214	-	7e-5	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.90	1620883_at	CA812348	-	-	4e-41	Atcg01250	-	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.89	1616224_at	CB978316	-	-	1e+1	At5g06450	nucleic acid binding	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.4	95.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.7	93.0	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.4	91.3	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
2.4	91.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.4	91.3	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.3	90.7	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.2	89.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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