Co-expression analysis

Gene ID	1607851_at
Gene name	hypothetical protein LOC100266538
Homology with Arabidopsis	Similar to At1g04660: glycine-rich protein (HF=9e-2)
Module size	6 genes
NF	0.88
%ile	99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1607851_at	CF415102	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.98	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1613074_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1617280_s_at	CF373668	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1609418_s_at	CF568955	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1615124_at	CF514122	hypothetical protein LOC100258563	-	8e-5	At1g71691	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.57986.1.S1_at, orthologous to the query gene, 1607851_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	TaAffx.57986.1.S1_at	At1g04660	-	-	5e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.1553.1.S1_at	At1g04660	-	-	1e+0	At3g11180	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.38625.1.S1_at	At1g04660	-	-	6e-2	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.128748.3.S1_at	At1g04660	-	-	1e+0	At4g33980	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.30598.1.S1_at	At1g04660	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.112158.1.S1_at	At1g04660	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.16699.2.S1_x_at	At1g04660	-	-	4e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.3203.2.S1_x_at	At1g04660	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.3664.1.S1_at	At1g04660	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.105769.1.S1_at	At1g04660	-	-	3e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.112839.2.S1_at	At1g04660	-	-	4e+0	At2g06960	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.119035.1.A1_at	At1g04660	-	-	1e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.3911.2.S1_s_at	At1g04660	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.64591.1.S1_at	At1g04660	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.56849.1.S1_at	At1g04660	-	-	1e+0	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.64474.2.S1_at	At1g04660	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.31313.1.S1_at	At1g04660	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.50210.1.S1_at	At1g04660	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.119231.1.S1_at	At1g04660	-	-	4e+0	Atmg00550	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.25306.1.S1_at	At1g04660	-	-	2e-1	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.111762.1.S1_at	At1g04660	-	-	1e+0	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.4954.3.S1_a_at	At1g04660	-	-	1e+1	At5g18180	Gar1 RNA-binding region family protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.29594.1.S1_at	At1g04660	-	-	8e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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