Co-expression analysis

Gene ID	1607845_at
Gene name	hypothetical protein LOC100265783
Homology with Arabidopsis	Similar to At3g25400: - (HF=3e-3)
Module size	10 genes
NF	0.23
%ile	33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.90	1607845_at	CF415092	hypothetical protein LOC100265783	-	3e-3	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1618920_at	CD013695	hypothetical protein LOC100260726	-	4e-7	At4g25980	cationic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1617748_a_at	CD801712	hypothetical protein LOC100262607	-	6e-3	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.99	1609568_at	CD801712	hypothetical protein LOC100262607	-	6e-3	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.99	1618061_a_at	CF514699	hypothetical protein LOC100262607	-	1e-64	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1620983_at	CF207286	hypothetical protein LOC100267272	-	3e-10	At5g01320	pyruvate decarboxylase, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1616685_at	CF211776	hypothetical protein LOC100244128	-	2e+0	At4g24990	ATGP4	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1619235_at	CB969704	hypothetical protein LOC100266132	-	3e-5	At1g15380	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.94	1613062_at	CF372388	-	-	2e+0	At1g29610	-	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.92	1616456_at	CF207729	hypothetical protein LOC100245069	-	4e+0	At5g52650	40S ribosomal protein S10 (RPS10C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.1	89.1	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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