Co-expression analysis

Gene ID	1607816_at
Gene name	hypothetical protein LOC100248686
Homology with Arabidopsis	Similar to At4g22130: SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) (HF=1e-28)
Module size	22 genes
NF	0.38
%ile	56.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1607816_at	CF216068	hypothetical protein LOC100248686	-	1e-28	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.97	1610048_at	CF403624	hypothetical protein LOC100258703	-	3e-4	At5g37310	-	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.97	1617357_at	CB921493	hypothetical protein LOC100263238	-	3e-25	At5g57410	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.97	1609398_at	CF413640	hypothetical protein LOC100261736	-	3e-66	At5g23860	TUB8	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1609772_at	CF511919	hypothetical protein LOC100246247	-	3e-1	At3g56880	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1613050_at	CB971087	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1618244_s_at	CF404277	hypothetical protein LOC100253823	-	1e-9	At3g57780	-	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1617851_s_at	CF404370	hypothetical protein LOC100266313	-	1e+0	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1611716_at	CF513400	hypothetical protein LOC100255395	-	5e-7	At2g38010	ceramidase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1606978_s_at	CF207835	hypothetical protein LOC100242245	-	5e-1	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1616515_at	CF211788	hypothetical protein LOC100259212	-	5e+0	At5g44900	transmembrane receptor	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1620782_at	CB973165	-	-	9e-27	At1g77460	binding	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1616651_at	BQ796747	hypothetical protein LOC100263083	-	1e-12	At1g09270	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1621245_at	CD720943	hypothetical protein LOC100245681	-	1e+0	At4g10630	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1612522_at	CF403281	hypothetical protein LOC100259324	-	7e-74	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1610924_at	BQ799924	hypothetical protein LOC100248224	-	1e+0	At1g35410	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1607831_at	BQ799075	hypothetical protein LOC100249242	-	8e-7	At3g03950	protein binding	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1620765_at	CF215290	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1622512_at	CF208965	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1611111_at	CF207166	hypothetical protein LOC100256502	-	3e-33	At1g63500	ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1608346_at	CF510726	hypothetical protein LOC100255903	-	1e-22	At1g73450	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1609115_at	BQ794176	hypothetical LOC100248456	-	7e-1	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage