Co-expression analysis

Gene ID	1607794_a_at
Gene name	hypothetical protein LOC100243178
Homology with Arabidopsis	Similar to At3g61610: aldose 1-epimerase family protein (HF=1e-10)
Module size	23 genes
NF	0.50
%ile	75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.93	1607794_a_at	CF609956	hypothetical protein LOC100243178	-	1e-10	At3g61610	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.94	1612031_at	CF413741	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.95	1611257_a_at	CB976439	hypothetical protein LOC100250923	-	3e-21	At5g08100	L-asparaginase / L-asparagine amidohydrolase	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.96	1611198_s_at	CF413741	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.95	1607101_s_at	CF603353	hypothetical protein LOC100245611	-	2e-67	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.96	1621259_at	BQ792070	hypothetical protein LOC100256240	-	2e-33	At5g04740	ACT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.95	1622090_at	CD801504	hypothetical protein LOC100260385	-	1e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.96	1612267_at	CF211274	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1607131_at	CB346815	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.96	1621516_at	CB923323	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.95	1620493_at	CF518674	hypothetical protein LOC100266795	-	2e-6	At5g41960	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.96	1609412_at	CF516257	hypothetical protein LOC100251928	-	7e-86	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1612181_at	CF518786	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.96	1606836_at	CA809479	hypothetical protein LOC100260106	-	1e-20	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.96	1613034_at	BQ797491	hypothetical protein LOC100248519	-	1e-1	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1610742_at	CB008464	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1608031_at	BQ792714	hypothetical protein LOC100253247	-	4e-20	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.95	1613313_at	BQ798873	hypothetical protein LOC100245611	-	1e-16	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1608442_at	AF177590.1	ornithine aminotransferase	-	8e-60	At5g46180	delta-OAT	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1618118_a_at	CF207254	-	-	3e-30	At1g79930	HSP91	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1618344_at	BQ796097	hypothetical protein LOC100266422	-	2e-5	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1607281_at	CB976932	hypothetical protein LOC100247365	-	5e-115	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1609671_at	CF512301	hypothetical protein LOC100258051	-	2e-8	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
1.7	84.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage