Co-expression analysis

Gene ID	1607773_at
Gene name
Homology with Arabidopsis	Similar to At5g07290: AML4 (ARABIDOPSIS MEI2-LIKE 4) (HF=2e-30)
Module size	7 genes
NF	0.20
%ile	29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1607773_at	CD719602	-	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.94	1618102_at	CF415084	-	-	7e-37	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1615204_at	CF371804	-	-	1e+0	At3g21580	cobalt ion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1619188_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1614328_at	CF205824.1	-	-	1e+0	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.95	1621037_at	CB980438	-	-	5e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.95	1609587_at	CF202068.1	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.1	98.1	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.9	97.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.6	97.6	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.9	96.6	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.9	96.6	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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