Co-expression analysis

Gene ID	1607723_at
Gene name
Homology with Arabidopsis	Similar to At3g06720: IMPA-1 (IMPORTIN ALPHA ISOFORM 1) (HF=5e-18)
Module size	15 genes
NF	0.33
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.93	1607723_at	CF568821	-	-	5e-18	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1609123_at	CF215118	hypothetical protein LOC100259150	-	2e-55	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1616784_at	CD007778	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1613291_at	CF972323.1	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1607789_at	CF604176	hypothetical protein LOC100258188	-	7e+0	At1g76460	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1618060_at	CF513542	hypothetical protein LOC100252303	-	5e-41	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1609051_at	CA818195	-	-	4e-32	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1607649_at	CB971586	-	-	4e-1	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1620813_at	BQ800573	hypothetical protein LOC100245718	-	2e-8	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1613284_s_at	CF607046	hypothetical protein LOC100261107	-	6e-1	At4g31030	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1609077_at	CF606671	hypothetical protein LOC100264912	-	3e-13	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1618216_at	CF415755	hypothetical protein LOC100259302	-	5e-47	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1611833_at	CB005444	hypothetical protein LOC100256245	-	5e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.5	91.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.4	91.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.8	86.0	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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