Co-expression analysis

Gene ID	1607676_at
Gene name	hypothetical protein LOC100262709
Homology with Arabidopsis	Similar to At5g10020: leucine-rich repeat transmembrane protein kinase, putative (HF=4e-6)
Module size	6 genes
NF	0.38
%ile	55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	0.97	1607676_at	CB983117	hypothetical protein LOC100262709	-	4e-6	At5g10020	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1610883_at	CD797323	-	-	2e-1	At5g33300	chromosome-associated kinesin-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1620728_at	CA818747	hypothetical protein LOC100245878	-	2e+0	At4g14104	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1615726_at	CB340839	hypothetical protein LOC100252488	-	4e+0	At5g40540	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1621091_at	CD799293	-	-	4e-28	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1618473_s_at	CF403518	hypothetical protein LOC100259836	-	1e+1	At5g53710	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.0	88.2	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.8	86.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage