Co-expression analysis

Gene ID	1607646_at
Gene name	hypothetical protein LOC100244584
Homology with Arabidopsis	Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=7e-59)
Module size	19 genes
NF	0.41
%ile	61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	0.97	1607646_at	CB977484	hypothetical protein LOC100244584	-	7e-59	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1609620_at	CB979452	-	-	7e+0	At5g51845	-	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.98	1621288_at	CB972014	hypothetical protein LOC100252015	-	2e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1607743_at	CF513620	hypothetical protein LOC100252303	-	5e-12	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1619148_at	CF513297	hypothetical protein LOC100263958	-	6e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1613730_at	CB036143	hypothetical protein LOC100264670	-	2e-43	At2g26460	RED family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1614091_at	CD798618	hypothetical protein LOC100253367	-	4e-12	At5g25230	elongation factor Tu family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1606771_at	CF517362	-	-	3e-39	At4g00660	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1614002_at	BQ794986	hypothetical protein LOC100242874	-	6e-3	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1612222_at	CB349107	hypothetical protein LOC100244118	-	1e-3	At1g16560	Per1-like family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1613361_s_at	CF211823	hypothetical protein LOC100242707	-	4e-2	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1618602_at	CD712496	hypothetical protein LOC100267246	-	4e-7	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1615027_s_at	CB977478	hypothetical protein LOC100246785	-	1e-15	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1613303_at	CB977627	similar to plectin-related	-	3e-16	At2g26770	plectin-related	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1618548_at	CD798160	hypothetical protein LOC100246661	-	2e-20	At2g06990	HEN2 (hua enhancer 2)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1620963_at	CF403847	hypothetical protein LOC100247592	-	7e-49	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1606841_s_at	CF513194	similar to UBC13A/UBC35 (UBIQUITIN-CONJUGATING ENZYME35); protein binding / ubiquitin-protein ligase	-	1e-62	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1612043_at	CF210844	hypothetical protein LOC100256975	-	5e-41	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1622482_at	CF414260	hypothetical protein LOC100265772	-	3e-11	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	97.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.1	89.1	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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