Co-expression analysis

Gene ID	1607622_at
Gene name	hypothetical protein LOC100265082
Homology with Arabidopsis	Similar to At2g17370: HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2) (HF=8e-17)
Module size	6 genes
NF	0.53
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.95	1607622_at	CF404670	hypothetical protein LOC100265082	-	8e-17	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1622787_at	CF607318	hypothetical protein LOC100244878	-	4e-19	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.96	1620603_at	CF515961	hypothetical protein LOC100256346	-	2e-43	At3g55760	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1616050_at	CF373308	hypothetical protein LOC100244878	-	9e+0	At5g06280	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1621867_at	CF516530	-	-	5e-2	At5g66000	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1609668_at	CA816744	hypothetical protein LOC100256598	-	1e+0	At3g12430	3'-5' exonuclease/ nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.6	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.2	89.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.1	89.1	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage