Co-expression analysis

Gene ID	1607612_at
Gene name	hypothetical protein LOC100262044
Homology with Arabidopsis	Similar to At4g31300: PBA1 (HF=2e-12)
Module size	8 genes
NF	0.60
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	75.7	0.97	1607612_at	CF202447.1	hypothetical protein LOC100262044	-	2e-12	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.97	1609811_at	CF208639	-	-	4e+0	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.97	1609018_at	CF204139.1	-	-	1e+0	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.97	1611884_at	CF569214.1	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.97	1621992_s_at	BQ793824	hypothetical protein LOC100259183	-	2e-11	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.97	1611129_s_at	CB005644	hypothetical protein LOC100261235	-	2e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1621749_x_at	CF569214.1	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1617552_at	CF202269.1	hypothetical protein LOC100243817	-	4e-35	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	99.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.3	90.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage