Co-expression analysis

Gene ID	1607601_at
Gene name	hypothetical protein LOC100244746
Homology with Arabidopsis	Similar to At1g09400: 12-oxophytodienoate reductase, putative (HF=2e-15)
Module size	6 genes
NF	0.51
%ile	76.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1607601_at	CF209956	hypothetical protein LOC100244746	-	2e-15	At1g09400	12-oxophytodienoate reductase, putative	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.90	1609973_at	CD801577	hypothetical protein LOC100244406	-	7e+0	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.93	1620851_at	CF206747.1	-	-	4e-1	At2g37210	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1620010_at	CA813625	-	-	3e+0	At5g40700	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.93	1618892_at	CF200898.1	-	-	2e-9	At3g23800	SBP3 (selenium-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.94	1607102_at	CF606606	-	-	2e+0	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.6	96.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.2	94.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
3.2	94.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.0	94.2	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
2.9	93.8	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.9	93.8	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
2.8	93.4	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.8	93.4	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.8	93.4	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

A co-expression module including the maize gene, Zm.7548.1.A1_at, orthologous to the query gene, 1607601_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	81.7	Zm.7548.1.A1_at	At1g09400	12-oxo-phytodienoic acid reductase5	-	5e-11	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.10787.1.A1_at	At1g09400	hypothetical protein LOC100274116	-	2e-13	At3g55000	TON1A (TONNEAU 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.1663.1.A1_at	At1g09400	VQ motif family protein	-	3e+0	At3g04600	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.16308.1.S1_s_at	At1g09400	hypothetical protein LOC100191269	-	8e-4	At4g34660	SH3 domain-containing protein 2 (SH3P2)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.10974.1.A1_at	At1g09400	-	-	4e+0	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.12638.1.S1_at	At1g09400	hypothetical protein LOC100216922	-	8e-7	At2g34060	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.15743.1.A1_at	At1g09400	hypothetical protein LOC100272480	-	1e+1	At4g03965	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.15735.1.S1_at	At1g09400	-	-	2e+0	At1g76590	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.8655.1.A1_at	At1g09400	-	-	5e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.27	24.6	ZmAffx.406.2.A1_at	At1g09400	-	-	2e-1	At1g74650	MYB31 (MYB DOMAIN PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.11617.1.A1_at	At1g09400	-	-	1e+0	At5g03150	JKD (JACKDAW)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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