Co-expression analysis

Gene ID	1607582_at
Gene name	hypothetical protein LOC100260114
Homology with Arabidopsis	Similar to At2g23660: LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) (HF=1e+0)
Module size	6 genes
NF	0.54
%ile	80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.98	1607582_at	CB349344	hypothetical protein LOC100260114	-	1e+0	At2g23660	LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1609735_at	CF372575	hypothetical protein LOC100249713	-	1e-75	At1g50030	TOR (TARGET OF RAPAMYCIN)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1612962_at	BQ794726	-	-	2e-2	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1614010_at	CF518977	hypothetical LOC100246762	-	4e+0	At1g60390	BURP domain-containing protein / polygalacturonase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1612660_at	CB980017	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1611458_at	CF207715	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	98.7	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.6	97.6	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
3.0	94.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.6	92.5	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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