Co-expression analysis

Gene ID	1607580_s_at
Gene name	similar to histone H3 /// similar to histone H3
Homology with Arabidopsis	Similar to At4g40040: histone H3.2 (HF=6e-87)
Module size	6 genes
NF	0.48
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.98	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1610728_at	CA808724	-	-	1e-180	Atcg00800	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	AFFX-r2-P1-cre-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	AFFX-Vvi-X03453-2_s_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	AFFX-CreX-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.98	1607924_at	CB971581	hypothetical protein LOC100261557	-	3e-11	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	98.4	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
2.9	93.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.8	93.4	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.8	93.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage