Co-expression analysis

Gene ID	1607578_at
Gene name	hypothetical protein LOC100247175
Homology with Arabidopsis	Similar to At5g57000: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.49
%ile	73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1607578_at	CF415519	hypothetical protein LOC100247175	-	1e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.96	1618230_at	CD801769	hypothetical protein LOC100245789	-	2e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1611253_at	CD798640	-	-	2e-1	At1g75060	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1616870_at	CF202454.1	-	-	2e+0	At5g46490	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1608238_at	BQ800567	hypothetical protein LOC100247004	-	1e+0	At1g56660	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1607676_at	CB983117	hypothetical protein LOC100262709	-	4e-6	At5g10020	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.1	99.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.4	98.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.5	97.5	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
4.5	97.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
2.8	93.4	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
2.5	91.9	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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