Co-expression analysis

Gene ID	1607564_at
Gene name	UPF0497 membrane protein 4
Homology with Arabidopsis	Similar to At5g41530: - (HF=1e+1)
Module size	7 genes
NF	0.22
%ile	31.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.95	1607564_at	CB350061	UPF0497 membrane protein 4	-	1e+1	At5g41530	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1619823_at	CB969271	hypothetical protein LOC100261518	-	1e-4	At3g43720	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1614513_at	CF414215	hypothetical protein LOC100250402	-	2e-1	At2g03550	hydrolase	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.94	1614131_at	CF415600	hypothetical protein LOC100247551	-	6e-2	At2g36760	UGT73C2 (UDP-glucosyl transferase 73C2)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1613151_at	BQ800267	hypothetical protein LOC100260721	-	1e-7	At4g27435	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.95	1621041_at	BQ794656	hypothetical protein LOC100251391	-	2e-5	At4g30200	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.95	1614926_at	CF369045	-	-	7e-8	At2g45630	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
2.2	89.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.0	88.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.137.1.A1_at, orthologous to the query gene, 1607564_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	ZmAffx.137.1.A1_at	At5g41530	Hypothetical protein LOC100192022	-	8e-1	At2g45130	SPX3 (SPX DOMAIN GENE 3)	O.I.	H.G.	S.X.	Please select
0.73	89.9	ZmAffx.1379.1.S1_at	At5g41530	-	-	1e+1	At4g38781	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	ZmAffx.1413.1.S1_at	At5g41530	-	-	1e-113	Atmg00660	-	O.I.	H.G.	S.X.	Please select
0.53	69.1	ZmAffx.1423.1.S1_at	At5g41530	-	-	3e+0	At4g23110	insulin-like growth factor binding	O.I.	H.G.	S.X.	Please select
0.27	24.6	ZmAffx.181.1.A1_at	At5g41530	-	-	8e-1	At5g25640	-	O.I.	H.G.	S.X.	Please select
0.27	24.6	ZmAffx.178.1.A1_at	At5g41530	trypsin/factor XIIA inhibitor	-	3e+0	At2g24040	hydrophobic protein, putative / low temperature and salt responsive protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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