Co-expression analysis

Gene ID	1607534_at
Gene name	hypothetical protein LOC100248163
Homology with Arabidopsis	Similar to At2g38460: ATIREG1 (IRON-REGULATED PROTEIN 1) (HF=3e-11)
Module size	6 genes
NF	0.56
%ile	82.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	64.1	0.93	1607534_at	CB345110	hypothetical protein LOC100248163	-	3e-11	At2g38460	ATIREG1 (IRON-REGULATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.96	1622020_s_at	BQ794212	hypothetical protein LOC100261607	-	1e-8	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1622431_at	CF371864	hypothetical protein LOC100264392	-	8e-1	At3g06895	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1614761_at	CD797278	hypothetical protein LOC100266857	-	4e+0	At1g69920	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1616564_at	CB979976	-	-	4e-42	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1615750_at	CD800994	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
3.5	95.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.2	94.9	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.1	94.6	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
3.1	94.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.1	94.6	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
3.0	94.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.0	94.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.9	93.8	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage