Co-expression analysis

Gene ID	1607487_at
Gene name	hypothetical protein LOC100247070
Homology with Arabidopsis	Similar to At5g15170: tyrosyl-DNA phosphodiesterase-related (HF=1e+0)
Module size	9 genes
NF	0.17
%ile	25.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	0.97	1607487_at	CD797833	hypothetical protein LOC100247070	-	1e+0	At5g15170	tyrosyl-DNA phosphodiesterase-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1612985_at	CB973869	-	-	5e-13	At3g49720	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1610219_at	CF415642	hypothetical protein LOC100253978	-	4e+0	At2g46308	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.99	1619759_at	CA814682	hypothetical protein LOC100253701	-	5e-29	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1614620_at	CF404986	hypothetical protein LOC100249044	-	5e-37	At5g37310	-	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.98	1607761_at	CB974335	hypothetical protein LOC100247652	-	9e-5	At1g56460	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1611522_at	CF215194	hypothetical protein LOC100243992	-	1e-4	At5g09880	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.98	1606528_at	CF511984	hypothetical protein LOC100241598	-	2e-8	At1g07480	transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.98	1607264_at	CF403300	hypothetical protein LOC100248449	-	7e-8	At1g07705	transcription regulator	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.5	91.9	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.1	89.1	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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