Co-expression analysis

Gene ID 1607487_at
Gene name hypothetical protein LOC100247070
Homology with ArabidopsisSimilar to At5g15170: tyrosyl-DNA phosphodiesterase-related (HF=1e+0)
Module size 9 genes
NF 0.17
%ile 25.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8494.80.971607487_atCD797833hypothetical protein LOC100247070-1e+0At5g15170tyrosyl-DNA phosphodiesterase-relatedO.I.H.G.S.X.
0.3548.50.981612985_atCB973869--5e-13At3g49720unknown proteinO.I.H.G.S.X.
0.2327.50.981610219_atCF415642hypothetical protein LOC100253978-4e+0At2g46308unknown proteinO.I.H.G.S.X.
0.2327.50.991619759_atCA814682hypothetical protein LOC100253701-5e-29At2g41530SFGH (S-FORMYLGLUTATHIONE HYDROLASE)O.I.H.G.S.X.
0.1819.40.981614620_atCF404986hypothetical protein LOC100249044-5e-37At5g37310-O.I.H.G.S.X.
0.1718.20.981607761_atCB974335hypothetical protein LOC100247652-9e-5At1g56460PAPA-1-like family protein / zinc finger (HIT type) family proteinO.I.H.G.S.X.
0.1515.60.981611522_atCF215194hypothetical protein LOC100243992-1e-4At5g09880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.099.40.981606528_atCF511984hypothetical protein LOC100241598-2e-8At1g07480transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)O.I.H.G.S.X.
0.077.80.981607264_atCF403300hypothetical protein LOC100248449-7e-8At1g07705transcription regulatorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.793.0GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.591.9GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436356Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM147726Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation55Link to GEO
2.189.1GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436403V. riparia (VR, PI588259) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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